- Also implemented real endstop reading on interrupt.

Better encapsulation and considerably reduce stepper jitter

`DONT_SWITCH` got lost along the way. Replace it with `DO_SWITCH_EXTRUDER` and adjust the code.

Fix #10699

Co-Authored-By: Zwaubel

Co-Authored-By: ejtagle <ejtagle@hotmail.com>

Allow the current command to complete when aborting an SD print, otherwise some commands (G28, G29, etc.) will cause trouble.

* Automatically reset stepper timeout in manage_inactivity

Any code that adds moves to the planner can skip resetting the stepper timeout. We can let `idle` / `manage_inactivity` reset the timer whenever it detects any moves in the planner.

* blocks_queued => has_blocks_queued

- Watchdog reset during SD Card initialization.
- Move `DebugMonitor` to `DebugMonitor_Due.cpp`.
- Since the watchdog is enabled on boot do extra resets during init.
- Have `thermalManager` do watchdog reset before its ISR starts to prevent reset.
- Ensure that timers are stopped before reprogramming them to address tone issues.
- Improve SAM3XE reset when reflashed through the native port.

* SD Status auto-report feature
Feature Request #9751

Fix #8805

Followup to #9503

Implemented for LPC1768.

Updating I2C position encoders to enable babystepping and Babystep XY when using the ecm microstep correction method. Also changed default method to ECM microstep.

Followup to 13a3fb1acc